Aqilah Sakinah Badrulisham, Daisuke Kageyama, Madihah Halim, Ameyra Aman-Zuki, Mohamed Mazmira Masri, Siti Nurulhidayah Ahmad, Badrul Munir Md-Zain, Salmah Yaakop.  (2022).  New insights into the phylogeography of the oil palm pest, metisa plana towards its management control.  - Journal of Oil Palm Research.  427-438. 

Nur Syafika Mohd-Yusof, Muhammad Abu Bakar Abdul-Latiff, Abd Rahman Mohd-Ridwan, Aqilah Sakinah Badrulisham, Nursyuhada Othman, Salmah Yaakop, Shukor Md-Nor, Badrul Munir Md-Zain.  (2022).  First report on metabarcoding analysis of gut microbiome in Island Flying Fox (Pteropus hypomelanus) in island populations of Malaysia.  - Biodiversity Data Journal.  1-23. 

M. A. Zamri; B. M. Md-Zain.  (2022).  Long-tailed macaques of the Batu Caves, Peninsular Malaysia: Population estimate, nuisance behaviors, and human perception.  - Journal of Animal and Plant Sciences.  1150-1158. 

Siti Norsyuhada Kamaluddin, Ikki Matsuda, Badrul Munir Md-Zain.  (2022).  Activity Budget and Postural Behaviors in Orangutans on Bukit Merah Orang Utan Island for Assessing Captive Great Ape Welfare.  - Journal of Applied Animal Welfare Science.  244-255. 

Faraliana Che Lah Ernieenor, Dmitry A. Apanaskevich; George Ernna, Bd Bilin Ellyncia, Badrul Munir Md. Zain, Ahamad Mariana, Salmah Yaakop.  (2021).  Morphological and molecular identification of medically important questing Dermacentor species collected from some recreational areas of Peninsular Malaysia.  - Systematic Parasitology.  731-751. 

Nadia Aqilla Shamsusah, Badrul Munir Md Zain, Sabapathy Dharmalingam, Fairuz Amran, Hani Kartini Agustar.  (2021).  Pengesanan dan Pencirian Leptospira spp pada Haiwan Liar dan Persekitaran di Pusat Pemuliharaan ex situ.  - Sains Malaysiana.  35-43. 

Ahmad Ampeng, Jack Liam, Boyd Simpson, Carl Traelholt, Shukor Md Nor, Mohd Shamsul Bahri Abdan Saleman, Syafiani Osman, Shaffeqe Affendy Zakaria, Badrul Munir Md Zain.  (2021).  First Bornean orangutan sighting in Usun Apau National Park, Sarawak.  - Biodiversity Data Journal.  1-6. 

Nor Rahman Aifat, Muhammad Abu Bakar Abdul-Latiff, Christian Roos, and Badrul Munir Md-Zain.  (2020).  Taxonomic revision and evolutionary phylogeography of dusky langur (Trachypithecus obscurus) in Peninsular Malaysia..  - Zoological Studies.  1-11. 

Pazil Abdul-Patah, Hiroshi Sasaki, Takeshi Sekiguchi, Md Nor Shukor, Nur Syafika Mohd-Yusof, Muhammad Abu Bakar Abdul-Latiff, Badrul Munir Md-Zain.  (2020).  Molecular DNA-based spatial mapping technique predicting diversity and distribution of otters (Lutrinae) in Peninsular Malaysia using non-invasive fecal samples.  - Mammal Research.  691-700. 

K. V. Karuppannan, K. A. Mohamed, M. F. A. Abdul-Razak, N. F. D. Ahmad-Tahir, N. A. Mohd-Naim, C. Keliang, S. Yaakop, J. E Maldonado, B. M. Md-Zain.  (2020).  Sex ratio and age structure patterns of Asian elephants from Peninsular Malaysia revealed by non-invasive surveys.  - Journal of Animal and Plant Sciences.  1415-1423. 

Badrul Munir Md-Zain, Aqilah Abdul-Aziz, Nor Rahman Aifat, Nur Syafika Mohd-Yusof, Nadiatur Akmar Zulkifli, Jeffrine Rovie Ryan Japning, Norsyamimi Rosli, Salmah Yaakop.  (2019).  Sequence variation data of the mitochondrial DNA D-loop region of the captive Malayan Gaur (Bos gaurus hubbacki).  - Data in Brief.  1-6. 

Norsyamimi Rosli, Frankie Thomas Sitam, Jeffrine Japning Rovie-Ryan, Han Ming Gan, Yin Peng Lee, Hartini Ithnin, Millawati Gani, Mohd Firdaus Ariff Abdul Razak, Badrul Munir Md-Zain, Mohd Tajuddin Abdullah.  (2019).  The complete mitochondrial genome of Malayan Gaur (Bos gaurus hubbacki) from Peninsular Malaysia.  - Mitochondrial DNA Part B: Resources.  2534-2535. 

Nadia Aqilla Shamsusah, Badrul Munir Md Zain, Fairuz Amran, ,Sabapathy Dharmalingam, Hani Kartini Agustar.  (2019).  Serological survey of leptospirosis in high-risk rangers and wild animals from ex-situ captive centers.  - Tropical Biomedicine.  443-452. 

Ameyra Aman Zuki, Muhamad Azmi Mohammed, Badrul Munir Md. Zain dan Salmah Yaakop.  (2019).  Phylogenetic relationships of five Oriental Apanteles-species group (Hymenoptera: Braconidae: Microgastrinae) by concatenating of four molecular markers.  - Journal of Asia Pasific Entomology.  341-352. 

M. A. B. Abdul-Latiff, N. R. Aifat, S. Yaakop and B. M. Md-Zain.  (2017).  A noninvasive molecular approach: exploiting species-locus-specific PCR primers in defeating numts and dna cross-contamination of cercopithecidae.  - The Journal of Animal & Plant Sciences.  1015-1023. 

Muhammad Khairul Anwar ROSLI, Syed Mohamad Fahmi SYED-SHABTHAR, Jeffrine Japning ROVIE-RYAN,Ramlah ZAINUDDIN, Md Nor SHUKOR, Salmah YAAKOP, Badrul Munir MD-ZAIN.  (2016).  Phylogenetic relationships of the vulnerable wild cattle, Malayan gaur (Bos gaurus hubbacki), and its hybrid, the selembu, based on maternal markers.  - Turkish Journal of Zoology.  369-378. 

Ameyra Aman Zuki, Muhamad Azmi Mohammed, Badrul Munir Md. Zain, Salmah Yaakop.  (2016).  Determination of host adaptation for wild highland population of Microgastrinae (Hymenoptera: Braconidae) using viral Histone H4.  - Journal of Asia-Pacific Entomology.  811-819. 

S. Yaakop, N.J. Ibrahim, S. Shariff & B.M. Md. Zain.  (2015).  Molecular clock analysis on five Bactrocera species flies (Diptera: Tephritidae) based on combination of COI and NADH sequences.  - Oriental Insects.  1-5. 

Rosli MKA, Abdul-Patah P, Syed-Shabthar SMF, Burhanuddin MN, Sekiguchi T, Sasaki H, Shukor MN, Yaakop S and Md-Zain BM.  (2015).  Phylogenetic Relationships of the Malay Peninsula Otters (Lutra sumatrana, Lutrogale perspicillata, and Aonyx cinereus) Based on DNA Sequences of D-loop Region.  - Journal of Animal and Plant Sciences.  836-843. 

Abdul-Latiff MAB, Ruslin F, Vun VF, Mohd-Hashim A, Rovie-Ryan JJ, Abdul-Patah P, Lakim M, Roos C, Yaakop S, Md-Zain BM.  (2014).  Phylogenetic relationships of Malaysia`s long-tailed macaques, Macaca fasicularis, based on cytochrome b sequences.  - Zookeys.  407: 121-139. 

S.M.N. Romaino, Z.A. Fazly-Ann, S.S. Loo, M.M. Hafiz, M.D. Hafiz, M.I. Iswadi, P. Kashiani, M.K.A. Rosli, S.M.F. Syed-Shabthar, B.M. Md-Zain and O. Abas-Mazni.  (2014).  Species identification of Malayan Gaur, Kedah-Kelantan and Bali cattle using polymerase chain reaction-restricted fragment length polymorphism.  - Genetics and Molecular Research.  13(1):406-414. 

S. Sharif, Ibrahim, N. J., B.M. Md. Zain, A.B. Idris, Y. Suhana, M.N. Roff & S. Yaakop.  (2014).  Multiplex PCR in determination of Opiinae parasitoids of fruit flies, Bactrocera sp., infesting star fruit and guava.  - Journal of Insect Science.  17(7):1-14. 

Md-Zain BM, Majid S, Rosli MKA, Yaakop S.  (2014).  Phylogenetic Position of Selembu and other Cattle via Paternal Marker Comparison.  - Life Science Journal.  12. 

Mohammad, K.N., Badrul, M.M., Mohamad, N. and Zainal-Abidin, A.H..  (2013).  Protozoan parasites of four species of wild anurans from a local zoo in Malaysia.  - Tropical Biomedicine.  30(4):615-620. 

Ahmad Ampeng and Badrul Munir Md-Zain.  (2012).  Ranging Patterns of Critically Endangered Colobine, Presbytis chrysomelas chrysomelas.  - The Scientific World Journal.  2012:Article ID 594382. 

K.C. Ang, J.W.H. Leow, W.K. Yeap, S. Hood, M.C. Mahani and B.M. Md-Zain.  (2011).  Phylogenetic relationships of the Orang Asli and Iban of Malaysia based on maternal markers.  - Genetics and Molecular Research.  10(2):640-649. 

V.F. Vun, M.C. Mahani, M. Lakim, A. Ampeng and B.M. Md-Zain.  (2011).  Phylogenetic relationships of leaf monkeys (Presbytis; Colobinae) based on cytochrome b and 12S rRNA genes.  - Genetics and Molecular Research.  10(1):368-381. 

M.K.A. Rosli, A.S. Zamzuriada, S.M.F. Syed-Shabthar, M.C. Mahani, O. Abas-Mazni and B.M. Md-Zain.  (2011).  Optimization of PCR conditions to amplify Cyt b, COI and 12S rRNA gene fragments of Malayan gaur (Bos gaurus hubbacki) mtDNA.  - Genetics and Molecular Research.  10(4):2554-2568. 

M.K.A. Rosli, S.S. Zakaria, S.M.F. Syed-Shabthar, Z.Z. Zainal, M.N. Shukor, M.C. Mahani, O. Abas-Mazni and B.M. Md-Zain.  (2011).  Phylogenetic relationships of Malayan gaur with other species of the genus Bos based on cytochrome b gene DNA sequences.  - Genetics and Molecular Research.  10(1):482-493. 

B.M. Md-Zain, M. Mohamad, M.A. Ernie-Muneerah, A. Ampeng, A. Jasmi, M. Lakim and M.C. Mahani.  (2010).  Phylogenetic relationships of Malaysian monkeys, Cercopithecidae, based on mitochondrial cytochrome c sequences.  - Genetics and Molecular Research.  9(4):1987-1996.. 

Ramlah Zainudin, Mustafa A. Rahman, Badrul Munir M. Zain, M. N. Shukor, R. F. Inger & A. Norhayati.  (2010).  Mating Calls Description of Five Species of Frogs from the Genus Hylarana Tschudi 1838 (Amphibia, Anura, Ranidae) from Sarawak, Malaysia.  - Sains Malaysiana.  39(3):363-369.