Syazwani Mohd Yusop, Muzzneena Ahmad Mustapha, Tukimat Lihan.  (2021).  Determination of spatio-temporal distribution of Rastrelliger kanagurta using modelling techniques for optimal fishing.  - Journal of Coastal Conservation.  1-17. 

Yeny Nadira Kamaruzzaman, Muzzneena Ahmad Mustapha, Mazlan Abd Ghaffar.  (2021).  Determination of fishing grounds distribution of the Indian Mackerel in Malaysia's exclusive economic zone off South China Sea using boosted regression trees model.  - Thalassas: An International Journal of Marine Sciences.  147-161. 

N.A.T. Ariffin, M.A. Mustapha, T.M. Taher, N.F. Khodri, N.I. Abdullah, S.M. Nor.  (2021).  Potential habitat connectivity for Malayan gaur (Bos gaurus) in a fragmented forest area in Peninsular Malaysia.  - Journal of Environmental Biology.  798-805. 

Taherah Mohd Taher, Tukimat Lihan, Nurul Atikah Tajul Arifin, Nur Fatin Khodri, Muzzneena Ahmad Mustapha, Pazil Abdul Patah, Siti Hajar Atiqah Razali, Shukor Mohd Nor.  (2021).  Characteristic of habitat suitability for the Asian elephant in the fragmented Ulu Jelai Forest Reserve, Peninsular Malaysia.  - Tropical Ecology.  347-358. 

Kamaruzzaman, Y.N., Mustapha, M.A., Ghaffar, M.A..  (2021).  Impacts of Sea Temperature Rise on Rastrelliger kanagurta Potential Fishing Grounds in the Exclusive Economic Zone (EEZ) off South China Sea.  - Sains Malaysiana.  3467-3479. 

Norshaqinah Ayob, Muzneena Ahmad Mustapha, Juliana Senawi, Norhayati Ahmad.  (2020).  Herpetofauna roadkills on Langkawi island, peninsular Malaysia: the influence of landscape and season on mortality distribution.  - Sains Malaysiana.  2373-2382. 

S.M. Yusop, M.A. Mustapha.  (2019).  Influence of oceanographic parameters on the seasonal potential fishing grounds of Rastrelliger Kanagurta using maximum entropy models and remotely sensed data.  - Sains Malaysiana.  259-269. 

Azima Abd.Manaf, Azlan Abas, Er Ah Choy, Roslan Abdul Hakim, Helen Mu Hung Ting, Kim Ling Geraldine Chan, Maslida Yusof, Mohd Sallehuddin Abd.Aziz, Muzzneena Ahmad Mustafa, Norasmah Othman, Norlida Hanim Mohd Salleh, Suhana Saad, Suzanna Mohamed Isa.  (2019).  Akademika: Jilid 89, Isu 1.  - Akademika: Jurnal Sains Sosial dan Kemanusiaan Asia Tenggara.  1-208. 

Azima Abd.Manaf, Azlan Abas, Er Ah Choy, Roslan Abdul Hakim, Helen Mu Hung Ting, Kim Ling Geraldine Chan, Maslida Yusof, Mohd Sallehuddin Abd.Aziz, Muzzneena Ahmad Mustafa, Norasmah Othman, Norlida Hanim Mohd Salleh, Suhana Saad, Suzanna Mohamed Isa.  (2019).  Akademika: Jilid 89, Isu 2.  - Akademika: Jurnal Sains Sosial dan Kemanusiaan Asia Tenggara.  1-217. 

Noor Fadzilah Yusof, Tukimat Lihan, Wan Mohd Razi Idris, Zulfahmi Ali Rahman, Muzzneena Ahmad Mustapha, Mohd. Abdul Wahab Yusof.  (2019).  Prediction of soil erosion in Pansoon sub-basin, Malaysia using RUSLE integrated in geographical information system.  - Sains Malaysiana.  2565-2574. 

Yeny Nadira, K., Mustapha, M.A., Ghaffar, M.A..  (2019).  The Indian Mackerel aggregation areas in relation to their oceanographic conditions.  - Sains Malaysiana.  2575-2581. 

Muzzneena Ahmad Mustapha, Azhar Abdul Halim, Mohd Rozi Umor.  (2019).  Bridging issue in addressing the agenda for sustainable development.  - Sains Malaysiana.  2297-2604. 

Shaari N.R., M.A. Mustapha.  (2018).  Predicting potential r. kanagurta fish habitat using MODIS satellite data and GIS modeling: a case study of exclusive economic zone, Malaysia.  - Sains Malaysiana.  . 

Tukimat Lihan, Nur Fatin Khodri, Muzzneena Ahmad Mustapha, Zulfahmi Ali Rahman & Wan Mohd Razi Idris.  (2018).  Potensi hakisan tanih di Lembangan Sungai Bilut, Raub, Pahang menggunakan integrasi RUSLE dan GIS.  - Sains Malaysiana.  . 

Nurdin, S., Mustapha, M.A., Lihan,T. & Tangang, F..  (2017).  Spatial and temporal variability of chlorophyll-a concentration in Makassar Strait using Empirical Orthogonal Function analysis.  - Indian Journal of Geo Marine Sciences.  1381-1389. 

F. Shaari & M.A. Mustapha.  (2017).  Factors influencing the distribution of Chl-a along coastal waters of east Peninsular Malaysia.  - Sains Malaysiana.  1191-1200. 

Suhartono Nurdin, Muzzneena Ahmad Mustapha, Tukimat Lihan & Mazlan Abd Ghaffar.  (2015).  Determination of Potential Fishing Grounds of Rastrelliger kanagurta Using Satellite Remote Sensing and GIS Technique.  - Sains Malaysiana.  225-232. 

M.A. Mustapha, T. Lihan & L.I. Khalid.  (2014).  Coral Reef and Associated Habitat Mapping Using ALOS Satellite Imagery.  - Sains Malaysiana.  1363-1371. 

M.A. Mustapha. S. sei-Ichi and T. Lihan.  (2009).  Satellite-measured seasonal variations in primary production in the scallop farming region of the Okhotsk Sea.  - ICES Journal of Marine Science.  66(7):1557-1569.