nur afiqah shalihin muhamad ismail, su hui yap, mohamad ariff mohamad yussoff, nor azlan nor muhammad, mohd firdaus-raih, doris huai xia quay.  (2023).  modeling and computational characterization of a xanthomonas sp. hypothetical protein identifies a remote ortholog of burkholderia lethal factor 1.  - journal of biomolecular structure and dynamics.  1-14. 

pravin kumran nyanasegran, sheila nathan, mohd firdaus raih, nor azlan nor muhammad, chyan leong ng.  (2023).  biofilm signaling, composition and regulation in burkholderia pseudomallei.  - journal of microbiology and biotechnology.  15-27. 

naif h m al-hardan, muhammad azmi abdul hamid, azman jalar, mohd firdaus-raih.  (2023).  unleashing the potential of gallium oxide: a paradigm shift in optoelectronic applications for image sensing and neuromorphic computing applications.  - materials today physics.  1-24. 

ahmad-kamal ghazali, mohd firdaus-raih, asqwin uthaya kumar, wei-kang lee, chee-choong hoh, sheila nathan.  (2023).  transitioning from soil to host: comparative transcriptome analysis reveals the burkholderia pseudomallei response to different niches.  - microbiology spectrum.  1-21. 

mursyidah, a.-k., hafizzudin-fedeli, m., nor muhammad, n.a., latiff, a., firdaus-raih, m., wan, k.-l..  (2023).  dissecting the biology of rafflesia species: current progress and future directions made possible with high-throughput sequencing data.  - plant and cell physiology.  368-377. 

george w. mobbs, adli a. aziz, samuel r. dix, g. m. blackburn, sveta e. sedelnikova, thomas c. minshull, mark j. dickman, patrick j. baker, sheila nathan, mohd firdaus raih, david w. rice.  (2022).  molecular basis of specificity and deamidation of eif4a by burkholderia lethal factor 1.  - communications biology.  1-11. 

siti asmaa mat jusoh, danesh thangeswaran, muhammad syahir hakimi mohd hazli, mohd firdaus raih, nurulasma abdullah, shaharum shamsuddin.  (2022).  construction of multi-epitopes vaccine candidate against sars-cov-2 d614g variant.  - sains malaysiana.  2985-2997. 

naif h al-hardan, muhammed azmi abdul hamid, mohd firdaus - raih.  (2022).  aluminum modified zno nanoparticles synthesized through co- precipitation.  - jurnal teknologi.  11-16. 

singh nivrenjeet, siti waheeda mohd-zin, singh nisheljeet, abu bakar azizi, kamalanathan palaniandy, mohd firdaus-raih, mohd hisam muhamad ariffin, nicholas daniel edward greene, noraishah mydin abdul-aziz.  (2022).  inflammation in embryology: a review of neuroinflammation in spina bifida.  - neuroscience research notes.  1-15. 

hafizzudin-fedeli, m., abu-bakar, m.-f., mat-isa, m.-n., latiff, a., firdaus-raih, m., wan, k.-l..  (2022).  characterisation of tetrastigma rafflesiae mitochondrial genes and assessment of their potential as sequence markers.  - sains malaysiana.  2435-2447. 

nur syatila ab ghani, reeki emrizal, sabrina mohamed moffit, hazrina yusof hamdani, effirul ikhwan ramlan, mohd firdaus-raih.  (2022).  grafss: a webserver for substructure similarity searching and comparisons in the structures of proteins and rna.  - nucleic acids research.  375-383. 

nisa syakila a. rahman, syazalina zahari, saiful effendi syafruddin, mohd firdaus-raih, teck yew low, m. aiman mohtar.  (2022).  functions and mechanisms of protein disulfide isomerase family in cancer emergence.  - cell & bioscience.  1-19. 

naif h. al-hardan, muhammad azmi abdul hamid, mohd firdaus-raih, lim kar keng, ensaf mohammed al-khalqi, azman jalar.  (2021).  calcium ion-selective electrode based on the facile synthesis of cuo over cu wires.  - journal of materials science: materials in electronics.  1-12. 

reeki emrizal, hazrina yusof hamdani, mohd firdaus-raih.  (2021).  graph theoretical methods and workflows for searching and annotation of rna tertiary base motifs and substructures.  - international journal of molecular sciences.  1-19. 

noor munyati othman, sri d. appasamy, nadzirah damiri, reeki emrizal, norfarrah mohamed alipiah, effirul ikhwan ramlan, mohd firdaus raih.  (2021).  regulation of glycine cleavage and detoxification by a highly conserved glycine riboswitch in burkholderia spp.  - current microbiology.  2943-2955. 

nur syatila ab ghani, reeki emrizal, haslina makmur, mohd firdaus raih.  (2020).  side chain similarity comparisons for integrated drug repositioning and potential toxicity assessments in epidemic response scenarios: the case for covid-19.  - computational and structural biotechnology journal.  2931-2944. 

xin-wei lee, su datt lam, mohd firdaus-raih, kiew-lian wan.  (2020).  molecular characterisation of eimeria tenella porin, a potential anticoccidial drug target.  - sains malaysiana.  755-764. 

shuhaila mat-sharani, and mohd firdaus-raih.  (2019).  computational discovery and annotation of conserved small open reading frames in fungal genomes.  - bmc bioinformatics.  . 

nur syatila ab ghani effirul ikhwan ramlan mohd firdaus-raih.  (2019).  drug reposer: a web server for predicting similar amino acid arrangements to known drug binding interfaces for potential drug repositioning.  - nucleic acids research.  350-356. 

hazrina yusof hamdani, mohd firdaus-raih.  (2019).  identification of structural motifs using networks of hydrogen-bonded base interactions in rna crystallographic structures.  - crystals.  1-14. 

mohd firdaus-raih, noor haza fazlin hashim, izwan bharudin, mohd faizal abu bakar, kie kyon huang, halimah alias, bernard k. b. lee, mohd noor mat isa, shuhaila mat-sharani, suhaila sulaiman, lih jinq tay, radziah zolkefli,yusuf muhammad noor, douglas sie.  (2018).  the glaciozyma antarctica genome reveals an array of systems that provide sustained responses towards temperature variations in a persistently cold habitat.  - plos one.  1-18. 

siuk-mun ng, xin-wei lee, mohd-noor mat-isa, mohd afiq aizat-juhari, jumaat haji adam, rahmah mohamed, kiew-lian wan, mohd firdaus-raih.  (2018).  comparative analysis of nucleus-encoded plastid-targeting proteins in rafflesia cantleyi against photosynthetic and non-photosynthetic representatives reveals orthologous systems with potentially ....  - scientific reports.  . 

izwan bharudin, mohd faizal abu bakar, noor haza fazlin hashim, mohd noor mat isa, halimah alias, mohd firdaus-raih, rosli md illias, nazalan najimudin, nor muhammad mahadi, farah diba abu bakar & abdul munir abdul murad.  (2018).  unravelling the adaptation strategies employed by glaciozyma antarctica pi12 on antarctic sea ice.  - marine environmental research.  . 

hazrina yusof hamdani, mohd firdaus-raih.  (2018).  analisis dan penyaringan data lewah interaksi kelompok bes berikatan hidrogen dalam struktur rna 3-dimensi.  - sains malaysiana.  . 

hirzahida mohd-padil, nadzirah damiri, suhaila sulaiman, shiao-fei chai, sheila nathan & mohd firdaus-raih.  (2017).  identification of srna mediated responses to nutrient depletion in burkholderia pseudomallei.  - scientific reports.  1-11. 

kuang-lim chan, tatiana v. tatarinova, rozana rosli, nadzirah amiruddin, norazah azizi, mohd amin ab halim, nik shazana nik mohd sanusi, nagappan jayanthi, petr ponomarenko, martin triska, victor solovyev, mohd firdaus-raih, et al..  (2017).  evidence-based gene models for structural and functional annotations of the oil palm genome.  - biology direct.  1-23. 

kuang-lim chan, rozana rosli, tatiana v. tatarinova, michael hogan, mohd firdaus-raih and eng-ti leslie low.  (2017).  seqping: gene prediction pipeline for plant genomes using self-training gene models and transcriptomic data.  - bmc bioinformatics.  1-7. 

yusof, n.y., firdaus-raih, m., mahadi, n.m., illias, r.m., abu bakar, f.d. & murad, a.m.a..  (2017).  in silico analysis and 3d structure prediction of a chitinase from psychrophilic yeast glaciozyma antarctica pi12.  - malaysian applied biology journal.  117-123. 

mei-perng lim, mohd firdaus-raih and sheila nathan.  (2016).  nematode peptides with host-directed anti-inflammatory activity rescue caenorhabditis elegans from a burkholderia pseudomallei infection.  - frontiers in microbiology.  1-14. 

sri devan appasamy, hazrina yusof hamdani, effirul ikhwan ramlan and mohd firdaus-raih.  (2016).  interrna: a database of base interactions in rna structuires.  - nucleic acids research.  266-271. 

jumaat haji adam, mohd afiq aizat juhari, rahmah mohamed, nor azilah abdul wahab, syamsurina arshad, mohd paiz kamaruzaman, mohd firdaus mohd raih & kiew-lian wan.  (2016).  rafflesia tuanku-halimii n. (rafflesiaceae), a new species from peninsular malaysia.  - sains malaysiana.  1589-1595. 

xin-wei lee, mohd-noor mat-isa, nur-atiqah mohd-elias, mohd afiq aizat-juhari, hoe-han goh, paul h. dear, keng-see chow, jumaat haji adam, rahmah mohamed, mohd firdaus-raih & kiew-lian wan.  (2016).  perigone lobe transcriptome analysis provides insights into rafflesia cantleyi flower development.  - plos one.  1-18. 

ping-ping yao, mohd firdaus raih, hasidah mohd sidek, noor embi & kiew-lian wan.  (2016).  pencirian molekul glikogen sintase kinase-3 dari eimeria tenella.  - sains malaysiana.  1947-1957. 

hui san ong, mohd syafiq rahim, noor hayaty abu kasim, mohd firdaus raih, effirul ikhwan ramlan.  (2016).  self assembly programming of dna polyominoes.  - journal of biotechnology.  141-151. 

yiling lee, rozieffa roslan, shariza azizan, mohd firdaus raih and effirul i. ramlan.  (2016).  an analysis of simple computational strategies to facilitate the design of functional molecular information processors.  - bmc bioinformatics.  1-13. 

hui san ong, mohd syafiq rahim, mohd firdaus raih, effirul ikhwan ramlan.  (2015).  dna tetrominoes: the construction of dna nanostructures using self-organised heterogeneous deoxyribonucleic acids shapes.  - plos one.  1-16. 

abdul latif osman, syed mohamed syed abdullah, siti marhamah drahaman, mohd firdaus raih, noraslinda muhamad bunnori, aisyah mohamed rehan.  (2015).  dna amplification optimization and cloning of several target genes from burkholderia pseudomallei.  - jurnal teknologi.  153-158. 

laziana ahmad, teng loong hung, nor azurah mat akhir, rahmah mohamed, sheila nathan and mohd firdaus-raih.  (2015).  characterization of burkholderia pseudomallei protein bpsl1375 validates the putative hemolytic activity of the cog3176 n-acyltransferase family.  - bmc microbiology.  270-281. 

faridah hani mohamed salleh, shereena mohd arif, suhaila zainudin, mohd firdaus-raih.  (2015).  reconstructing gene regulatory networks from knock-out data using gaussian noise model and pearson correlation coefficient.  - computational biology and chemistry.  3-14. 

hyy yap, yh chooi, m firdaus-raih, sy fung, st ng, cs tan, nh tan.  (2014).  the genome of the tiger milk mushroom, lignosus rhinocerotis, provides insights into the genetic basis of its medicinal properties.  - bmc genomics.  15:1-12. 

noor, y.m., samsulrizal, n., jema`on, n.a., low, k.o., ramli, a.n., alias, n.i., damis, s.i., fuzi, s.f., isa, m.n., murad, a.m.a., raih, m.f.m., bakar, f.d.a, najimudin, n., mahadi, n.m., illias, r.m.  (2014).  a comparative genomic analysis of the alkalitolerant soil bacterium bacillus lehensisg1.  - gene.  545: 253-261. 

sofiyah shaibullah, nurhikmah mohd sharif, kok lian ho, mohd firdaus raih, sheila nathan, rahmah mohamed and ng chyan leong.  (2014).  crystallization and preliminary crystallographic studies of the hypothetical protein bpsl1038 from burkholderia pseudomallei.  - acta crystallographica section f structural biology communications.  1697-1700. 

mohd firdaus raih, hazrina yusof hamdani, nurul nadzirin, effirul ikhwan ramlan, peter willett, peter j. artymiuk.  (2014).  cognac: a webserver for searching and annotating hydrogen bonded base interactions in rna 3-dimensional structures.  - nucleic acids research.  1-7. 

nurul nadzirin, peter willett, peter j. artymiuk, mohd firdaus raih.  (2013).  imaaagine: a webserver for the searching of hypothetical 3d amino acid side chain arrangements in the protein data bank.  - nucleic acids research.  41(Web Server):W432-W440. 

sri d. appasamy, effirul ikhwan ramlan, mohd firdaus raih.  (2013).  comparative sequence and structure analysis reveals the conservation and diversity of nucleotide positions and their associated tertiary interactions in the riboswitches.  - plos one.  8(9):e73984. 

hui san ong, rahmah mohamed, mohd firdaus raih.  (2012).  comparative genome sequence analysis reveals the extent of diversity and conservation for glycan associated proteins in burkholderia spp.  - comparative and functional genomics.  Art no.752867. 

hazrina yusof hamdani, sri d. appasamy, peter willett, peter j. artymiuk, mohd firdaus raih.  (2012).  nassam: a server to search for and annotate tertiary interactions and motifs in three-dimensional structures of complex rna molecules.  - nucleic acids research.  40:W35-W40. 

nurul nadzirin, mohd firdaus-raih.  (2012).  proteins of unknown function in the protein data bank (pdb): an inventory of true uncharacterized proteins and computational tools for their analysis.  - international journal of molecular sciences.  13(10):12761-12772. 

nurul nadzirin, eleanor j. gardiner, peter willett, peter j. artymiuk, mohd firdaus raih.  (2012).  sprite and assam: web servers for side chain 3d-motif searching in protein structures.  - nucleic acids research.  40:W380-386. 

jia-shiun khoo, shiao-fei chai, rahmah mohamed, sheila nathan, mohd firdaus-raih.  (2012).  computational discovery and rt-pcr validation of novel burkholderia conserved and burkholderia pseudomallei unique srnas.  - bmc genomics.  13(S8),S13. 

abimael cruz-migoni, guillaume m. hautbergue, peter j. artymiuk, nor muhammad mahadi, rahmah mohamed, sheila nathan, mohd firdaus raih, david rice et.al.  (2011).  a burkholderia pseudomallei toxin inhibits helicase activity of translation factor eif4a.  - science.  334(6057):821-824. 

mohd firdaus-raih, anne-marie harrison, peter willett, peter j artymiuk.  (2011).  novel base triples in rna structures revealed by graph theoretical searching methods.  - bmc bioinformatics.  12(S13):S2. 

mohd firdaus raiha, shandar ahmad, rong zheng and rahmah mohamed.  (2005).  solvent accessibility in native and isolated domain environments: general features and prediction of unsaturated bonds in a protein sequence.  - biophysical chemistry.  114(1):63-69. 

mohd. raih, m.f., sailan, a.t., zamrod, z., embi, m.n., mohamed, r..  (2003).  a predicted structure of the cytochrome c oxidase from burkholderia pseudomallei.  - electronic journal of biotechnology.  6(1):18-25.